School part: preliminary program
Monday, July 4, 2016:
9-10.30: Introduction to Linux (David Langenberger, Mario Fasold, ecSeq Bioinformatics)
10.30-11.00: Coffee break
11.00-12.30: Introduction to NGS technologies and data analysis (David Langenberger, Mario Fasold, ecSeq Bioinformatics)
12.30-14.00: Lunch (Mensa)
14.00-15.30: NGS notations and terminology (David Langenberger, Mario Fasold, ecSeq Bioinformatics)
15.30-16.00: Coffee break
16.00-17.30: Quality control and pre-processing of raw data (David Langenberger, Mario Fasold, ecSeq Bioinformatics)
18.00: Welcome reception
Tuesday, July 5, 2016:
9.00-10.30: Read mapping (David Langenberger, Mario Fasold, ecSeq Bioinformatics)
10.30-11.00: Coffee break
11.00-12.30: Statistics and visualization of mapped reads (David Langenberger, Mario Fasold, ecSeq Bioinformatics)
12.30-14.00: Lunch (Mensa)
14.00-15.30: Quantification of gene expression (Alexander Gabel, Claus Weinholdt, Ioana Lemnian, MLU Halle-Wittenberg)
15.30-16.00: Coffee break
16.00-17.30: Detection of differentially expressed genes (Alexander Gabel, Claus Weinholdt, Ioana Lemnian, MLU Halle-Wittenberg)
18.00: Discussions and food
Wednesday, July 6, 2016:
9.00-10.30: SNP calling (Martin Porsch, Ioana Lemnian, MLU Halle-Wittenberg)
10.30-11.00: Coffee break
11.00-12.30: Genome wide association study (Bettina Konte, Martin Porsch, MLU Halle-Wittenberg)
12.30-14.00: Lunch (Mensa)
End of school part