SPP 1530: Flowering Time Control - from Natural Variation to Crop Improvement

School part: preliminary program

Monday, July 4, 2016:

9-10.30: Introduction to Linux (David Langenberger, Mario Fasold, ecSeq Bioinformatics)

10.30-11.00: Coffee break

11.00-12.30: Introduction to NGS technologies and data analysis (David Langenberger, Mario Fasold, ecSeq Bioinformatics)

12.30-14.00: Lunch (Mensa)

14.00-15.30: NGS notations and terminology (David Langenberger, Mario Fasold, ecSeq Bioinformatics)

15.30-16.00: Coffee break

16.00-17.30: Quality control and pre-processing of raw data (David Langenberger, Mario Fasold, ecSeq Bioinformatics)

18.00: Welcome reception

 

Tuesday, July 5, 2016:

9.00-10.30: Read mapping (David Langenberger, Mario Fasold, ecSeq Bioinformatics)

10.30-11.00: Coffee break

11.00-12.30: Statistics and visualization of mapped reads (David Langenberger, Mario Fasold, ecSeq Bioinformatics)

12.30-14.00: Lunch (Mensa)

14.00-15.30: Quantification of gene expression (Alexander Gabel, Claus Weinholdt, Ioana Lemnian, MLU Halle-Wittenberg)

15.30-16.00: Coffee break

16.00-17.30: Detection of differentially expressed genes (Alexander Gabel, Claus Weinholdt, Ioana Lemnian, MLU Halle-Wittenberg)

18.00: Discussions and food

 

Wednesday, July 6, 2016:

9.00-10.30: SNP calling (Martin Porsch, Ioana Lemnian, MLU Halle-Wittenberg)

10.30-11.00: Coffee break

11.00-12.30: Genome wide association study (Bettina Konte, Martin Porsch, MLU Halle-Wittenberg)

12.30-14.00: Lunch (Mensa)

End of school part

 

 

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